Enter php doc as the name. You can group it differently if you’d like.
Leave most of the options at defaults. I chose to leave it as Current Vagrant. (if you don’t have this option, you might not have vagrant installed in this project. You may want to choose a default remote interpreter instead.)
I entered phpdocumentor as the program because I have it installed as a global command. This might be something like “php path/to/phpdoc/bin” if you have it installed with composer.
Finally, I put my parameters in the parameters input box. You can set your own based on the phpdocumentor cli options, but mine basically says the source code directory (-d) and the output location (-t)
Click OK and you’re good to go for phpdocumentor.
The same configuration can be done with apiDoc. For parameters, I used “-i /path/to/api.php -o /path/to/api/doc/output”.
After you save this, you now have external tools available to use in PHPStorm. You simply have to click on the Tools menu, hover over External tools, and choose your tool from the menu. (Note, if you have used vagrant, it may ask you to confirm you’d like to use the current vagrant instance each time you run the tool.) Also, if you chose a different group for the commands, the menu will be different.